Structure Checker : Alias Checker

Checker searches for aliases in the structure.

Fixer offers:

  • converting the alias to atom if the alias value corresponds to an element (e.g. Ar);
  • converting the alias to abbreviated group if the alias values corresponds to a group in the abbreviated group list;
  • removing alias (revealing the atom under the alias); or
  • deleting the alias atom.


Example:

Alias Checker Warning: Fix
Convert to Atom Convert Alias to Group Remove Alias Delete Atom
Detect Alias ex_alias_ch convert to atom convert ot group ex_alias_frem ex_alias_fdel


Notes: "OMe" and "CL" were defined as alias. After converting "OMe" to methoxy group, the abbreviated group is linked correctly to the chain, i.e., bond through the oxygen atom.
Alias only covers the atom, and fixer removes this alias from the original atom.