Structure Checker : Overlapping Bonds Checker

Checker searches for overlapping bonds: bonds crossing each other or bonds closer to each other than the set minimal value.

Fixer offers cleaning the structures by 2D clean or partial clean.


Example:

Overlapping Bonds Checker Warning: Fix
Clean
Detect Overlapping Bonds ex_overlappingbonds_ch ex_overlappingbonds_f


Note: Bridged polycycles are cleaned as far as their structure allows it, and the overlapping bonds warning will remain.