chemaxon.util.iterator

Class IteratorFactory.NeighbourIterator<E>

java.lang.Object

chemaxon.util.iterator.IteratorFactory.NeighbourIterator<E>

All Implemented Interfaces:

Iterator<E>

Direct Known Subclasses:

IteratorFactory.AtomNeighbourIterator, IteratorFactory.BondNeighbourIterator

Enclosing class:

IteratorFactory

public abstract class IteratorFactory.NeighbourIterator<E>
extends Object
implements Iterator<E>

The NeighbourIterator class provides an iterator to process the bonds connecting to the specified atom according to the atom and bond related behavior of this factory.

Field Summary

Fields

Modifier and Type	Field and Description
protected MolAtom	atom The atom whose the neighbours are processed.
protected int	currentBond Current bond pointer of the iterator.
protected List<MolBond>	secondaryBonds Secondary bonds that replace a coordinate bond to the multicenter with coordinate bonds from the metal to the represented atoms (in the MulticenterSgroup of the multicenter).

Constructor Summary

Constructors

Constructor and Description
IteratorFactory.NeighbourIterator(MolAtom atom) Constructs an iterator to process the bonds connecting to the specified atom.

Method Summary

Methods

Modifier and Type	Method and Description
protected MolBond	getBond(int index) Returns a bond of a specified index.
boolean	hasNext() Decides whether the iteration has more element.
protected int	nextBondIndex(int index) Returns the next bond index in the iteration according to the atom and bond related behavior specified in the factory.
void	remove() The remove operation is not supported by this Iterator implementation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

next

Field Detail

atom

protected MolAtom atom

The atom whose the neighbours are processed.

currentBond

protected int currentBond

Current bond pointer of the iterator.

secondaryBonds

protected List<MolBond> secondaryBonds

Secondary bonds that replace a coordinate bond to the multicenter with coordinate bonds from the metal to the represented atoms (in the MulticenterSgroup of the multicenter). These secondary bonds are not added to the molecule of the factory, so do not use Molecule.indexOf for the secondary bonds! In the future, secondary bonds may be implemented for other types of connections too.

Constructor Detail

IteratorFactory.NeighbourIterator

public IteratorFactory.NeighbourIterator(MolAtom atom)

Constructs an iterator to process the bonds connecting to the specified atom. The following bonds are excluded:

• bonds excluded in the bond related behavior of the factory and
• bonds connecting to atoms that are excluded in the atom related behavior of the factory.

Parameters:

atom - the atom whose bonds to be iterated

Method Detail

getBond

protected MolBond getBond(int index)

Returns a bond of a specified index.

Parameters:

index - the specified index of the bond

Returns:

the bond of the specified index

hasNext

public boolean hasNext()

Decides whether the iteration has more element.

Specified by:

hasNext in interface Iterator<E>

Returns:

true if the iteration has more element, false otherwise.

nextBondIndex

protected int nextBondIndex(int index)

Returns the next bond index in the iteration according to the atom and bond related behavior specified in the factory.

Parameters:

index - the current index to get the subsequent index from

Returns:

the subsequent index

remove

public void remove()

The remove operation is not supported by this Iterator implementation.

Specified by:

remove in interface Iterator<E>

Throws:

UnsupportedOperationException

See Also:

Iterator.remove()